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Team & Contact

Development Team

Principal Developer

Zhaoqi Shi Institute of Quantitative Biology Zhejiang University

Email: zshi268@wisc.edu
GitHub: @AIB100

Research Interests: - Molecular dynamics simulations - Protein-ligand interactions - Force field development - Computational drug discovery

Research Group

Institute of Quantitative Biology Zhejiang University Hangzhou, China

Contributors

We welcome and acknowledge all contributors to PRISM:

Code Contributors

  • Core development: Zhaoqi Shi
  • Bug fixes and improvements: Community contributors

Documentation

  • User guide: Zhaoqi Shi
  • Examples and tutorials: Community contributors
  • Translation: Open for contributions

Testing

  • Beta testing: Research group members
  • Issue reporting: Community users

How to Contribute

Reporting Issues

Found a bug or have a feature request?

  1. Check existing GitHub Issues
  2. Create a new issue with:
  3. Clear description
  4. Steps to reproduce (for bugs)
  5. Environment details (OS, GROMACS version, Python version)
  6. Example files if possible

Contributing Code

  1. Fork the repository
  2. Create a feature branch
  3. Make your changes
  4. Add tests if applicable
  5. Submit a pull request

For detailed instructions, please open an issue or pull request on GitHub.

Contributing Documentation

Help improve PRISM documentation:

  • Fix typos and clarify explanations
  • Add examples and use cases
  • Translate documentation
  • Create video tutorials

Providing Feedback

  • Share your experience in GitHub Discussions
  • Suggest improvements
  • Report what works well
  • Help other users

Contact

General Inquiries

Email: zshi268@wisc.edu

Please include "PRISM" in the subject line.

Bug Reports

Use GitHub Issues

Feature Requests

Use GitHub Discussions or Issues

Collaboration

Interested in collaborating on PRISM development or using PRISM in your research? Contact us to discuss opportunities.

Academic Collaboration

PRISM is developed in an academic research environment and we welcome academic collaborations:

  • Joint method development
  • Force field benchmarking
  • Application to specific biological systems
  • Integration with other tools

Contact Zhaoqi Shi to discuss potential collaborations.

Support

Community Support

  • GitHub Discussions: Best for questions and discussions
  • GitHub Issues: For bug reports and feature requests
  • Documentation: Check docs first for common questions

Response Time

  • Bug Reports: Usually within 1-3 days
  • General Questions: Within a week
  • Feature Requests: Evaluated monthly

Social Media

Follow PRISM development updates:

Mailing List

Subscribe to the PRISM mailing list for: - Release announcements - Major updates - Workshops and tutorials

(Mailing list coming soon)

Workshops and Training

Interested in PRISM training or workshops for your institution?

Contact us to arrange: - Remote training sessions - On-site workshops - Custom tutorials

Last Updated: October 2024